n5-ij
Here we cover how to open OME-Zarr as a Fiji image.
Open a remote OME-Zarr in Fiji
Open the n5-ij in Fiji via:
On the window that opens, paste the following path in the uri space:
Then click Detect datasets button as shown below:
The tool will display a multiscales schema with two datasets in the dialog box. Select one of the datasets as shown below and click OK:
This will open the dataset in Fiji as a normal Fiji image (see below).
Open a Subset of a Remote OME-Zarr in Fiji
Follow the same steps above do select a dataset but instead of directly opening the dataset,
click the crop button in the window before clicking OK as shown below:
In the window that open, select the indices of the subset as shown below:
When you click OK, the specified subset of the image will be opened as shown below:
