MoBIE

• Run Fiji with MoBIE
• Open OME-Zar with labels and label table in MoBIE:
• [ Plugins › MoBIE › Open › Open OME ZARR... ]
  • Image URI: https://s3.embl.de/i2k-2020/platy-raw.ome.zarr (8 TB)
  • Labels URI: https://s3.embl.de/i2k-2020/platy-raw.ome.zarr/labels/cells
  • Labels Table URI: https://raw.githubusercontent.com/mobie/platybrowser-project/refs/heads/main/data/1.0.1/tables/sbem-6dpf-1-whole-segmented-cells/default.tsv
  • Note that the labels table is not integrated within the OME-Zarr, because a specification for this does not, despite hard work, yet exist. MoBIE supports a number of table formats and column names (see here).