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OME-Zarr Validator with Remote Data

Validate remote OME-Zarrs using the OME-Zarr validator.

Validate remotely stored OME-Zarrs against NGFF 0.4 or 0.5.

  • Find out the metadata fields such as axes, units and scales.
  • Check the array and chunk shapes and bytes per resolution level.
  • Visualize a single chunk.
  • Obtain direct links to web viewers.

Examples

Enter the following into your browser: 

https://ome.github.io/ome-ngff-validator/?source=

Then paste the following dataset url after the 'equal' sign: 

https://s3.embl.de/ome-zarr-course/data/commons/xyz_8bit_calibrated__fib_sem_crop.ome.zarr

Thus construct the following link:

https://ome.github.io/ome-ngff-validator/?source=https://s3.embl.de/ome-zarr-course/data/commons/xyz_8bit_calibrated__fib_sem_crop.ome.zarr

Note that with the remote url it is possible to copy the link from your browser and share it with your colleagues.

Try with NGFF 0.5 example: 

https://s3.embl.de/eosc-future/fair_workshop/201215_MDL34_IgMdelta1_GFP_CAAX_10ms_x100_3_good.zarr

Try also with the large example with labels:

https://s3.embl.de/i2k-2020/platy-raw.ome.zarr